the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.

Sulfide mineralogy of igneous basic rocks (ophites) from the external zone of the Betic Cordillera
Idael F. Blanco-Quintero
Lola Yesares
Claudio Marchesi
Amira R. Ferreira
Igor González-Pérez
Erwin Schettino
Francisco Abel Jiménez Cantizano
Fernando Gervilla
The Triassic sedimentary rocks of the external zone of the Betic Cordillera in southern Spain host abundant igneous basic rocks (“ophites”) metamorphosed in the greenschist facies. Investigation based on high-resolution transmission electron microscopy (HRTEM) reveals magmatic sulfides intimately intergrown with primary silicates (pyroxene, plagioclase and olivine), consisting of pyrrhotite (FeS to Fe7S8; monoclinic C2/c polytype 4C) and pentlandite ((FeNi)9S8; cubic Fm3m), bounded by tetragonal I2d chalcopyrite (CuFeS2). Whole-rock and clinopyroxene geochemical data suggest that Fe–Ni–Cu sulfides crystallized from melt droplets segregated by immiscibility from transitional-alkaline magmas, after their fractional crystallization and volatile oversaturation within crustal conduits developed during intraplate rifting. In contrast, hydrothermal sulfides are pyrite (FeS2) and/or chalcopyrite associated with secondary silicates (chlorite, epidote, saussurite, prehnite, sericite and quartz). Porous pyrite (cubic Pa3) hosts nanodomains of pyrrhotite (monoclinic C2/c polytype 4C and orthorhombic Cmca polytype 11C) and orthorhombic Pnnm marcasite (FeS2), evidencing disulfide formation via coupled Fe loss and S addition in pyrrhotite due to reaction with high-fS2 and high-fO2 fluids at < 300 °C. Tetragonal I2d chalcopyrite replacing pyrite also preserves nanodomains of pyrrhotite as well as of pyrite marcasite, suggesting reaction of pre-existing Fe sulfides with Cu transported by low-temperature (∼ 200–100 °C) acidic-to-neutral fluids. Additionally, inclusions of sphalerite (ZnS), galena (PbS) and vaesite (NiS2) in pyrite and chalcopyrite spotlight metal remobilization during hydrothermal alteration, which is further confirmed by the crystallization of cobaltite coronas (CoAsS) around pyrite. Our new results contribute to the current debate of the full sequence of processes operating in ore-forming mafic systems.
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Hypabyssal (dolerite) and plutonic (gabbro) bodies of basic rocks are among the main hosts for metal sulfides worldwide. In these types of igneous rocks, sulfides are found as accessory minerals, with areas of mineralization and ore deposits that are priority targets for the exploration of economically valuable metals such as Ni, Cu, Co, Au and Ag and the platinum group elements (PGEs) Os, Ir, Ru, Rh, Pt and Pd (Piña, 2019; Neyedley et al., 2019; Mansur et al., 2023). The origin of these sulfides is usually attributed to either magmatic or hydrothermal processes as well as a combination of both. Magmatic sulfides are usually associated with sulfide melt immiscibility in basaltic magmas, and they are usually found as solid inclusions within main minerals such as plagioclase, pyroxene, olivine, and to lesser extent apatite or ilmenite (e.g., Li and Ripley, 2009; Piña et al., 2013; Holwell et al., 2017; Mansur et al., 2023; Neyedley et al., 2019). They are usually the Fe–Ni–Cu sulfides pyrrhotite (Fe1−xS), pentlandite (Fe,Ni)9S8, chalcopyrite (CuFeS2) and bornite (Cu5FeS4), corresponding to the low-temperature products of the (Fe,Ni)1±xS monosulfide solid solution (MSS), [(Cu1±x, Fe1±y)S2] intermediate solid solution (ISS), or the quaternary solid solution spanning the compositional range between heazlewoodite [(Ni,Fe)3±xS2] (Hzss) and ISS (Fleet and Pan, 1994; Li et al., 1996; Ballhaus et al., 2001; Peregoedova and Ohnenstetter, 2002; Naldrett, 2004; Mungall et al., 2005; Helmy et al., 2021). Post-magmatic evolutions of basic rocks may also modify the pre-existing magmatic sulfides via interaction with late magmatic or hydrothermally related metamorphic fluids, promoting the formation of minerals (usually S-poorer sulfides or alloys) that are stable under the new conditions (Mansur et al., 2021) and the further concentration or removal of metals in the rock (Holwell et al., 2017; Wang et al., 2021).
In this work, we address the origin of sulfides in igneous basic rocks from the external zone of the Betic Cordillera in southern Spain (Fig. 1a–b). These rocks include outcrops of small subvolcanic dolerite bodies that were emplaced into sedimentary rocks of marginal basins, mainly during the Triassic–Jurassic limit, and then hydrothermally altered in the Early Miocene by metamorphism related to continental collision (Puga et al., 1988; Morata, 1993; Portugal-Ferreira et al., 1995; Morata et al., 1997; Blanco-Quintero et al., 2024). This is a suitable scenario for evaluating segregation of metal sulfides during magmatism, as well as for elucidating the impact on sulfide mineralogy of fluid–rock interaction during metamorphism. Mineralogical and geochemical data are used to constrain the relative contributions of the “primary” magmatic vs. “secondary” hydrothermal processes, emphasizing the nanoscale study aiming to provide information not accessible by conventional geochemical and mineralogical studies.
2.1 Geological overview of the Betic Cordillera
The Betic Cordillera is located in southern Spain and constitutes the westernmost segment of the Alpine orogen in the Mediterranean region (Fig. 1a), which was developed by the convergence between the Iberian and African plates from Late Cretaceous to Tertiary times, coeval with the westward migration of the Mesomediterranean subplate (Rosembaum et al., 2002). The Betic Cordillera has traditionally been subdivided into three structural and paleogeographical zones (see Vera, 2004; Fig. 1a): (1) the internal zone (or Alboran domain) is located in the inner arc and consists of remnants of the Mesomediterranean subplate; (2) the external zone (or South Iberian domain) consists of Triassic–Lower Miocene sediments deposited in the south Iberian and northern African paleo-margins, mostly deformed as a fold-and-thrust belt in the outer orogenic arc; and (3) a suture zone is located between the external and internal zones, which comprises the Flysch deposits of the Campo de Gibraltar Complex and the frontal units, both consisting of Cretaceous to Miocene deep-water deposits.
The internal zone extends across the southernmost sector of the Betic Cordillera (Fig. 1a; Vera, 2004). Here, allochthonous tectonic units originally located in the Mesomediterranean paleo-margin (Guerrera et al., 2021) were intensely deformed and metamorphosed, forming an antiformal stack of thick-skinned nappes made of Paleozoic and Meso-Cenozoic rocks that thrusted over the southern margin of the Iberian Plate. This antiformal stack comprises three main complexes: (1) the Nevado–Filábride Complex, corresponding to the deepest nappe complex, crops out in several tectonic windows below the overlying Alpujárride Complex in the central and eastern zones of the Betics. It is made up exclusively of metamorphic rocks, which mostly include Paleozoic metasediments (Rodríguez-Cañero et al., 2018) and Permo-Triassic to Cretaceous rocks metamorphosed up to eclogite facies conditions (e.g., Vera, 2004; Puga et al., 2017, and references therein). (2) The Alpujárride Complex consists of a lower sequence of metapelites and quartzites of Paleozoic age, an intermediate member of Permian–Middle Triassic phyllites and quartzites with increasing quantities of calc-schists upwards, and an upper variably thick carbonate member of Middle to Upper Triassic age (Martín-Algarra, 1987; Vera, 2004, and references therein). The easternmost lower Alpujárride units contain basic rocks that intruded Permian–Triassic sediments and were metamorphosed during the Alpine collisional (Barrovian) metamorphism (Blanco-Quintero et al., 2024). In the westernmost part of the Betic orogenic belt, the lithological sequence of the Alpujárride Complex includes ultramafic rocks from the subcontinental lithospheric mantle, known as the Serranía de Ronda peridotites. (3) The Malaguide Complex comprises Paleozoic sediments unconformably covered by Permian(?)–Triassic to Lower Miocene sediments that show very low-grade or absent metamorphic overprinting (Vera, 2004; Sanz de Galdeano et al., 2006).

Figure 1(a) Geological map of the Betic Cordillera (modified from Vera, 2004). (b) Outcrops of sulfide-bearing igneous basic rocks analyzed in this study from the external zone of the Betic Cordillera (modified from Morata, 1993). Legends inset.
The external zone of the Betic Cordillera crops out widely to the south of the Iberian Cordillera and southeast of the Variscan Massif (Fig. 1a). It is subdivided into two large tectonostratigraphic domains that represent two sectors of the South Iberian paleo-margin (Vera, 2004): (1) the Prebetic domain proximal to the Iberian Massif and (2) the more distal Subbetic domain. The oldest rocks are Triassic sediments of the Germanic facies (Pérez-López and Pérez-Valera, 2007; Pérez-Valera and Pérez-López, 2008; Pérez-Valera et al., 2017). Younger sediments mainly comprise Middle Triassic (Anisian–Ladinian) epicontinental marine deposits of the Keuper and upper Muschelkalk facies. These deposits constitute the main detachment level of the tectonic units. In particular, the Keuper material consists of multicolored and red shales, sandstones, and gypsum, which are locally intruded by igneous basic rocks that are the subject of this study. These basic rocks were formed during an intracontinental rifting phase affecting the southern Iberian paleo-margin since the Triassic to Middle Jurassic, which has been related to the Central Atlantic Magmatic Province volcanism and the earliest stages of aperture of the Atlantic Ocean (Marzoli et al., 1999; Pérez-López et al., 2021).
2.2 Dolerites (ophites) in the external zone of the Betic Cordillera
More than 2000 outcrops of igneous basic rocks are widespread throughout the internal and external zones of the Betic Cordillera. They include submarine basaltic flows, subvolcanic dolerite and minor gabbro bodies hosted in sedimentary rocks of the Keuper facies (carbonate clays of variegated colors with frequent intercalations of gypsum, marls and carbonates). The K–Ar whole-rock geochronology of basic rocks has yielded ages varying from 187 to 47 Ma (these age endmembers correspond to the localities Alicún de Ortega (Granada Province) and Huelma (Jaén Province; Puga et al., 1988; Morata, 1993; Portugal-Ferreira et al., 1995). Morata (1993) suggested that Cenozoic ages reflect the resetting of older (Triassic or Jurassic) intrusion ages by Alpine metamorphism. The latter event was caused crystallization of secondary quartz, carbonate, amphibole, epidote, pumpellyite, prehnite and chlorite. This assemblage indicates low-grade to very low-grade metamorphism in the prehnite–pumpellyite facies, although minerals suggesting higher-pressure conditions are locally observed (Puga et al., 1983; Morata et al., 1992, 1994; Morata, 1993; Blanco-Quintero et al., 2024).

Figure 2Photographs showing field morphologies and structures of some sulfide-bearing dolerite bodies targeted in this study from the Jaén (a) and Cádiz (b–c) provinces. (a) Santa Ana (Alcalá la Real; 37°24′46.66′′ N, 3°52′27.40′′ W). (b) Arroyo del Saltillo (Chiclana de la Frontera; 36°25′51.70′′ N, 6°1′4.50′′ W). (c) Alcalá de los Gazules (toponymic; 36° 27′36.17′′ N, 5°43′34.92′′ W).
Overall, the geochemistry of the basic rocks identifies two compositional affinities: (1) tholeiitic and (2) transitional to alkaline sodic (Morata et al., 1997; Pérez-López et al., 2021). The tholeiitic samples are mainly composed of clinopyroxene, plagioclase and minor proportions of orthopyroxene, while the transitional and alkaline bodies contain olivine in addition to clinopyroxene and plagioclase. These different geochemical signatures point to the generation of magmas from different mantle sources during successive stages of intracontinental rifting affecting the southern Iberian paleo-margin. Continental rifting was related to the early aperture of the Atlantic Ocean in the Triassic to Middle Jurassic (Pérez-López et al., 2021). This syn-rift phase continued in the Late Jurassic–Early Cretaceous and was followed by an Albian to Late Cretaceous passive margin (post-rift) stage (e.g., Morata et al., 1997; Puga et al., 1988; Morata, 1993; Portugal-Ferreira et al., 1995; Pérez-López et al., 2021).
3.1 Sampling
This work focuses on 50 bodies scattered in the external zone of the Betic Cordillera, in an area of around 50×400 km from the Cádiz to Alicante provinces (Fig. 1b). Two hand-specimen samples of each sampled body were cut and sliced into thick polished sections (∼ 150 to 200 µm) in an effort to search for sulfides and other metallic minerals. However, only six clusters of basic bodies had sulfide grains amenable to mineralogical study, all of them hosted in Triassic rocks of the Subbetic zone. These bodies crop out near the town of Alcalá la Real in Jaén Province (Santa Ana and Ermita Nueva in Fig. 1b; Díaz de Neira Sánchez et al., 1988; 37°24′46.66′′ N, 3°52′27.40′′ W) and the villages of Olvera (toponymic in Fig. 1b; 36°54′45.43′′ N, 5°21′27.79′′ W), Alcalá de los Gazules (toponymic in Fig. 1b; Hernáiz Huertas et al., 1984; 36°27′36.17′′ N, 5°43′34.92′′ W), Paterna de Rivera (Peña Arpada in Fig. 1b; 36°30′28.97′′ N, 5°49′22.03′′ W) and Chiclana de la Frontera (Arroyo del Saltillo in Fig. 1b; García de Domingo et al., 1983; 36°25′51.70′′ N, 6°1′4.50′′ W) in Cádiz Province.
3.2 Whole-rock geochemistry
Hand-specimen samples were crushed and powdered in an agate mortar and then analyzed for major, minor and trace elements at the Centro de Instrumentación Científica of the Universidad de Granada, Spain. Major element and zirconium compositions were determined on glass beads, made of powdered sample diluted in lithium tetraborate using a Philips MagiX PRO (PW 2440) X-ray fluorescence (XRF) instrument. The precision was better than ± 1.5 % (relative error) for an analyte concentration of 10 wt % and better than ± 0.2 % for 5 ppm concentration of Zr. Loss on ignition (LOI) was determined by the weight difference before and after ignition of samples in a furnace. Trace elements, except Zr, were analyzed in the same laboratory by inductively coupled plasma–mass spectrometry (ICP-MS) after HNO3+ HF digestion of 0.1000 g of sample powder in a Teflon-lined vessel at 180 °C and 200 psi for 30 min, with evaporation to dryness and subsequent dissolution in 100 mL of 4 vol % HNO3. The precision was better than ± 2 % for analyte concentrations of 50 ppm and ± 5 % for analyte concentrations of 5 ppm. Results of whole-rock analyses are listed in File S1 (Supplement).
3.3 Major, minor and trace element compositions of silicates
Quantitative single-spot analyses of major and minor elements in silicates were carried out by electron probe microanalysis (EPMA) at the Universidad de Huelva (Spain) using a JEOL JXA-8200 SuperProbe equipped with four wavelength-dispersive X-ray spectrometry (WDS) instruments, an energy-dispersive X-ray spectrometer (EDS), and backscattered and secondary electron detectors. Analyses were carried out at very small spot sizes (1–2 µm beam diameter), using an accelerating voltage of 15 kV and a beam current of 20 nA. The standards used were albite (Na), wollastonite (Si and Ca), sanidine (K), rutile (Ti), Al2O3 (Al), periclase (Mg), Fe2O3 (Fe), Cr2O3 (Cr), baryte (Ba), NiO (Ni) and MnO (Mn), and the conventional ZAF correction procedure was applied to the data. Clinopyroxene was normalized to 4 cations and 6 oxygens, with Fe3+ estimated by stoichiometry (Morimoto et al., 1988), whereas chlorite was normalized to 11 oxygens. Results of in situ EPMAs of silicates are listed in File S2 (Supplement).
Trace elements in clinopyroxene were analyzed by laser ablation–inductively coupled plasma–mass spectrometry (LA-ICP-MS). Analyses were conducted on polished thin sections by coupling a Thermo Fisher iCAP RQ ICP-MS instrument and a Teledyne Photon Machines Iridia excimer 193 nm laser at the Andalchron SCT Facility of the Instituto Andaluz de Ciencias de la Tierra, CSIC, Universidad de Granada (Spain). The thin sections were brought into a cobalt cell, supplied with a He gas flow of 0.6 L min−1. During analysis, the laser was fired, employing an energy density of 3 J cm−2 with a 10 Hz repetition rate. The integration time for all analyses was 10 or 20 ms depending on the element. The ablation was performed in static spot mode on a 50 µm spot size for 40 s as automatic driven positioning. Data were reduced using the Iolite 2.5 software package (Paton et al., 2011) on the Igor Pro platform, by the careful inspection of time-resolved spectra to check for the homogeneity and stability of signals during ablation time. Elements were calibrated using the synthetic glass NIST610 SRM. Calcium content, determined by EPMA, was used as an internal standard. The validation standard BHVO-2G (synthetic glass, IAG USGS) was included between the unknowns and shows excellent agreement with working values of this material (Jochum et al., 2016). Results of LA-ICP-MS analyses are listed in File S3 (Supplement).
3.4 Mineralogy of sulfides
Preliminary characterization and imaging of sulfides were carried out using a Leo Gemini field emission scanning electron microscopy (FE-SEM) instrument at the Centro de Instrumentación Científica of the Universidad de Granada, Spain. The instrument was equipped with an energy-dispersive spectra (EDS) detector. The accelerating voltage was 20 kV, and the beam current was optimized for an adequate number of counts for each EDS analysis.
Single-spot analyses of the chemical composition of the sulfides were subsequently acquired using an EPMA (electron probe microanalysis) instrument, a JEOL JXA-8200 SuperProbe at the Servicios Centrales de Investigación of the Universidad de Huelva (Spain). Measurements were performed on carbon-coated polished sections using an accelerating voltage of 20 kV and a beam current of 15 nA. The concentrations of S, Fe, Cu, Co, Ni, Hg, Bi, As, Sb, Se, Zn, Pb and Te were determined by wavelength-dispersive spectroscopy (WDS) in single-spot analyses. Analyzer crystals were PETJ (Sb), PETH (S, Te, Hg, Bi), LIFH (Cu, Ni, Co, Fe) and TAP (As, Se); X-ray lines were Kα for S, Fe, Cu, Co, Ni and Zn; Lα for Sb, As, Te and Se; and Mα for Hg, Bi and Pb. The standard materials were pyrite (S and Fe), native metals (Cu, Co and Ni), HgTe (Hg and Te), Bi2S2 (Bi), Zn3As2 (As), Sb2S3 (Sb), SnSe (Se), ZnS (Zn) and PbS (Pb). Results of EPMAs of sulfides are listed in File S4 (Supplement).
Five thin-foil samples (three from Santa Ana plutonic stock and two from Peña Arpada hypabyssal dolerite) were extracted using two focused ion beam scanning electron microscopy (FIB-SEM) instruments at the Servicios Centrales de Investigación Científica y Tecnológica of the Universidad de Cádiz or the Laboratorio de Microscopías Avanzadas (LMA) of the Instituto de Nanociencia de Aragón (INA), Universidad de Zaragoza, Spain. At Cádiz, the transmission electron microscopy (TEM) thin-foil preparation was carried out using an FEI Scios™ 2 DualBeam™, whereas at Zaragoza we employed a Thermo Fisher Scientific FEI DualBeam Helios 650. In the two labs, the selected regions of interest were first covered by a thin strip (∼ 300 nm) of C by focused-electron-beam-induced deposition (FEBID), and subsequently by a second strip (∼ 1 µm) of C in order to avoid potential metal contamination (e.g., by Pt commonly used in this type of sample preparation). These strips act as protection during the milling, polishing and extraction process of the thin foils. The bulk material was first removed on both sides of the lamella by rough Ga+ ion milling with a 30 kV voltage at 5 nA (Cádiz) and 2.5 nA (Zaragoza) current. The final polishing step was performed until electron transparency was achieved. This was completed by subsequently milling the thin foil with a 5 kV voltage and current at 48 pA (Cádiz) and 68 pA (Zaragoza). The electron transparency was monitored by an Everhart–Thornley secondary electron (SE) detector and using a 5 kV electron beam. After achieving the electron transparency, the thin foil was rapidly polished using a low-energy 5 kV current at 10 pA to reduce the amorphization until a final thin-foil thickness of ∼ 90–70 nm was attained. Subsequently, the thin foil was undercut with a 30 kV voltage at 2.5 nA current, lifted out and transferred from the sample to a TEM grid using an OmniProbe nanomanipulator with a tungsten tip. To weld the thin foil to the tungsten tip and the TEM grid, ion-beam-assisted Pt deposition was performed, ensuring no Pt decoration on the prepared thin foil.
Two high-resolution transmission electron microscopy (HRTEM) instruments were used to analyze the thin foils previously prepared by FIB-SEM: (1) a Thermo Fisher Scientific Talos F200X at the Servicios Centrales de Investigación Científica y Tecnológica of the Universidad de Cádiz (Spain) and (2) a probe-corrected Thermo Fisher Titan TEM instrument equipped with the field emission gun X-FEG at the Laboratorio de Microscopías Avanzadas (LMA) of the Instituto de Nanociencia de Aragón (INA), Universidad de Zaragoza, Spain. The two microscopes are equipped with a high-brightness X-FEG and a spherical aberration Cs corrector (CEOS) at the condenser system (probe-corrected). To characterize the texture of the grains and to properly define the ordering of the mineral aggregates, selected mineral areas of interest sampled within the thin foils were imaged firstly using a combination of high-angle annular dark-field (HAADF) imaging to obtain Z high-contrast images by scanning transmission electron microscopy (STEM) and high-resolution transmission electron microscopy (HRTEM).
The Talos instrument worked at 200 kV accelerating voltage, achieving point resolution ∼ 0.25 and 0.16 nm under the HRTEM and HR-SEM modes, respectively. High-resolution images were obtained using a CMOS Ceta 16 Mpx camera, and the equipment was operated using Velox software. The Titan instrument was run in 300 kV working conditions while HRTEM images were acquired using a Gatan CCD camera. When necessary, post-laboratory filtering of diffraction data acquired by HR image processing (i.e., fast Fourier transform (FFT) images) was carried out using the ImageJ software version 1.543f. In order to analyze the chemical composition of the materials, X-ray energy-dispersive spectra (EDS) were obtained with an Ultim Max detector (Oxford Instruments). All these data were treated using the AZtec Oxford Instruments software package.
A summary of crystallographic data acquired from the thin foils analyzed in this study is provided in Tables A1 and B1 as well as Files S5 and S6 (Supplement).
4.1 Petrography
Sulfide-bearing dolerites are small bodies < 1 km2 (Fig. 2a–c) with textures varying from typical plutonic (in Santa Ana) to hypabyssal (in Ermita Nueva, Olvera, Alcalá de los Gazules, Peña Arpada and Arroyo del Saltillo) (Fig. 3a–g). The Santa Ana stock consists of two layers, one enriched in olivine (up to 45 vol %) at the bottom and another dominated by plagioclase, clinopyroxene and amphibole on the top (Morata and Puga, 1991, 1992). Post-cumulus phases include hydrous minerals such as amphibole (edenite–kaersutite) and phlogopite constituting < 10 vol % of the rock (Fig. 3a–b). In Santa Ana, igneous minerals are relatively well preserved, while in Olvera most primary mineralogy is altered. The hypabyssal dolerites from Ermita Nueva, Alcalá de los Gazules, Peña Arpada and Arroyo del Saltillo are olivine-free and have fine- to medium-grained ophitic to subophitic textures (Fig. 3c–h). The finer-grained rocks occur in chilled margins, while the core of the bodies has a medium grain size. Dolerites show variable degrees of transformation of the original igneous assemblage, mainly clinopyroxene and plagioclase, with no primary silicates preserved in the smaller bodies of Ermita Nueva and Peña Arpada (e.g., Fig. 3c–d). The euhedral to subhedral plagioclase crystals are prismatic and locally embayed against clinopyroxene phenocrysts. Minor proportions of orthopyroxene, biotite and amphibole are present, the latter mainly as a result of transformation of clinopyroxene. Apatite, ilmenite and magnetite are accessory phases. Minor amounts of interstitial quartz and alkali feldspar are locally observed in granophyric intergrowths. Some dolerites include crustal xenoliths (mainly rich in carbonates or sillimanite; Morata and Puga, 1992) and/or are crosscut by quartz veinlets a few millimeters thick. The typical low-temperature metamorphic assemblage of these rocks consists of chlorite ± epidote ± albite ± actinolite ± calcite ± quartz.

Figure 3Photomicrographs of selected sulfide-bearing dolerite samples under polarized transmitted light (with both parallel and crossed polarized). (a–b) Olivine-rich cumulate from Santa Ana (Alcalá la Real). (c–d) Xenolith of dolomite + calcite in fully transformed fine-grained dolerite from Ermita Nueva (Alcalá la Real). (e–f) Subophitic texture of partially altered dolerite from Saltillo (Chiclana de la Frontera). (g–h) Ophitic texture of partially altered dolerite from Alcalá de los Gazules. Abbreviations – Ol: olivine; Bt: biotite ; Cpx: clinopyroxene; Ilm: ilmenite; Chl: chlorite; Cal: calcite; Plag: plagioclase.
4.2 Whole-rock and mineral geochemistry
Whole rocks of the Santa Ana cluster have basic–intermediate compositions with 45.99 SiO2 wt %–56.12 SiO2 wt % and total alkali (Na2O + K2O) contents of 2.38 wt %–5.15 wt % as well as high Cr (285 ppm) and variable Mg# (51–74) and CaO (6.38 wt %–9.71 wt %) (Fig. 4a; File S1, Supplement). The Olvera olivine-bearing rocks show basic compositions with 48.16 SiO2 wt %–48.82 SiO2 wt % and total alkali contents of 4.44 wt %–4.90 wt % but lower Cr (177–211 ppm) and Mg# (58) and higher CaO (9.68 wt %–11.51 wt %) (Fig. 4a). Rocks from these two areas have more transitional to alkaline affinities in terms of elements unaffected by low-temperature remobilization (Fig. 4b). Their chondrite-normalized rare earth element (REE) patterns (Fig. 4c) are characterized by a negative slope with strong enrichment in light rare earth elements (LREEs) and depletion in heavy rare earth elements (HREEs) (e.g., LaN YbN=3.14–3.35). In the primitive mantle (PM)-normalized extended trace element diagram (Fig. 4d), these samples show relative enrichment in large-ion lithophile elements (LILEs; Cs, Rb) in comparison with the high-field-strength elements (HFSEs; Nb) and opposite anomalies of Ba, Pb and Sr.

Figure 4Bulk-rock composition of analyzed samples. (a) Total alkali silica (TAS) diagram of Cox et al. (1979; the red line divides the alkaline and subalkaline fields). (b) Zr TiO2 versus Nb Y classification diagram of Winchester and Floyd (1977). Chondrite-normalized (McDonough and Sun, 1995) REE patterns (c) and N-MORB-normalized (Sun and McDonough, 1989) trace element patterns (d) of the samples. The compositions of N-MORB, E-MORB and OIB (Sun and McDonough, 1989) are plotted for reference.
According to Morata (1993), cumulitic olivine from the Santa Ana stock exhibits iron-richer composition upwards along the profile (Fo76−84), whereas intercumulus plagioclase is mainly labradorite (An55−64) and clinopyroxene is diopsidic (Wo46En44Fs10). The new EPMAs obtained in this study (n=22; File S2, Supplement) confirm previous results by Morata (1993). Clinopyroxenes from Santa Ana (WSATA-1) have Wo = 46.4–50.0, En = 43.7–48.5, Fs = 3.8–7.1 and Mg# = 86–92, with Al contents = 0.12–0.25 apfu, Ti = 0.03–0.09 apfu and Na = 0.02–0.04 apfu (Fig. 5a–b; Supplement). Clinopyroxenes from Olvera olivine-bearing rocks have compositions with Wo = 48.8–49.8, En = 35.5–37.1, Fs = 13.3–15.6, Mg# = 69–73, Al = 0.25–0.34 apfu, Ti = 0.09-0.10 apfu and Na = 0.04-0.05 apfu (Fig. 5a–b; File S2, Supplement). In situ LA-ICP-MS analyses of the Santa Ana clinopyroxenes yield concentrations of lithophile trace elements varying between ∼ 0.1 and 10, the values of primitive upper mantle (Fig. 5c; Supplement). Normalized patterns show relative depletion in Th, U and Nb and generally increasing contents from Ta to middle rare earth elements (MREEs; e.g., Tb, Dy) (Fig. 5c; File S3, Supplement). Lead, Sr and Eu have notable negative spikes in the normalized patterns (e.g., SrN Sr* = 0.2–0.4, Sr* = (PrN+ NdN) 2, EuN Eu* = 0.7–0.9, Eu* = (SmN+ GdN) 2), whereas Ti is slightly enriched compared with adjacent MREEs of similar compatibility. Light and heavy rare earth elements (LREEs and HREEs) are depleted relative to MREEs (e.g., LaN SmN=0.4–0.5, SmN YbN=1.8–2.2) (Fig. 5c; File S3, Supplement).

Figure 5In situ geochemistry of clinopyroxene in the sulfide-bearing dolerites of this study. (a–b) Major elements obtained by EPMA (using classification scheme of Morimoto et al., 1998). (c) Minor and trace elements obtained by LA-ICP-MS. Note that in (d) melts in equilibrium with clinopyroxene from the Santa Ana olivine-rich dolerite stock were calculated applying the partition coefficients of Bonechi et al. (2021) between diopside and alkali basalts (Ta: 0.06; La: 0.11; Ce: 0.19; Pr: 0.29; Sr: 0.104; Nd: 0.41; Zr: 0.30; Hf: 0.62; Sm: 0.65; Eu: 0.54; Gd: 0.78; Tb: 0.87; Dy: 0.90; Y: 0.85; Ho: 0.86; Er: 0.86; Tm: 0.77; Yb: 0.76; Lu: 0.75), whereas melts in equilibrium with clinopyroxene from olivine-free hypabyssal dolerites of Alcalá de los Gazules and Arroyo del Saltillo were computed applying the partition coefficients of Norman et al. (2005) between high-Ca augite and tholeiitic melts (La: 0.033; Ce: 0.065; Pr: 0.105; Sr: 0.061; Nd: 0.155; Zr: 0.072; Hf: 0.141; Sm: 0.270; Eu: 0.271; Gd: 0.377; Dy: 0.467; Y: 0.444; Ho: 0.500; Er: 0.425; Yb: 0.438; Lu: 0.418). Representative compositions of N-MORB (solid line; Klein, 2003), basalt from magma-poor rifted margins (dashed line; Desmurs et al., 2002) and continental alkaline basalts (dotted line; Farmer, 2003) are shown for comparison. Normalizing values are from Sun and McDonough (1989). PUM denotes primitive upper mantle.
Whole-rock analyses of the olivine-free bodies (Alcalá de los Gazules, Peña Arpada and Arroyo del Saltillo) yield basic–intermediate compositions with 52.96 SiO2 wt %–53.53 SiO2 wt % and total alkali (Na2O+K2O) contents 4.35 wt %–5.42 wt %, having subalkaline affinities (Fig. 4a–b; File S1, Supplement). These samples have variable Cr (105–178 ppm) and moderate Mg# (48–54) and CaO (8.15 wt %–9.05 wt %). Chondrite-normalized rare earth element patterns (Fig. 4c) are similar to those of Santa Ana and Olvera bodies and show strong enrichment in LREEs relative to HREEs (LaN YbN=3.61–3.82). In the PM-normalized extended trace element diagram (Fig. 4d), these samples also show enrichment in large-ion lithophile elements (LILEs) in comparison with the high-field-strength elements (HFSEs), and Nb is especially depleted (Fig. 4d; File S1, Supplement).
Clinopyroxene in these olivine-free rocks (samples SAL17-3, AG21-4 and AG17-2) is augitic, with Wo = 32.9–45.9, En = 26.4–56.2, Fs = 5.9–30.0, Mg# = 47–90, Ti < 0.03 apfu, Na < 0.02 apfu and Al < 0.12 apfu (Fig. 5a–b; File S2, Supplement). In situ LA-ICP-MS analyses show lower trace element contents than in the Santa Ana dolerite (∼ 0.02 to 4, the values of primitive upper mantle; Fig. 5c; File S3, Supplement), except for Ba, Th, U and Nb with concentrations variable between 1–2 orders of magnitude, possibly reflecting ablation of low-temperature epidote and/or amphibole inclusions. Normalized patterns of these clinopyroxenes show evident negative spikes of Pb and Sr, although spikes of Pb are less prominent than in clinopyroxene from Santa Ana (Fig. 5c; File S3, Supplement). Zirconium and Hf are notably fractionated relative to LREEs and MREEs (e.g., ZrN NdN=0.1–0.4 in Alcalá de los Gazules and Saltillo vs. 0.6–0.9 in Santa Ana), and Ti is generally depleted compared to MREEs (Fig. 5c; File S3, Supplement). Concentrations of LREEs and Eu are variably fractionated relative to MREEs (LaN SmN = 0.3–1.3, EuN Eu* = 0.8–1.3), and MREEs and HREEs are less fractionated than in Santa Ana clinopyroxene (SmN YbN=1.0–1.5).
The proportions of sulfides vary from one dolerite body to another between ∼ 1 vol % and 10 vol %. The sulfide assemblage mainly consists of phases rich in Fe (pyrite, marcasite, pyrrhotite), Fe–Ni (pentlandite and vaesite) or Cu (chalcopyrite and bornite). These minerals are associated with both primary igneous and alteration-related (secondary) silicates.
5.1 Micrometer-scale to nanoscale characterization of sulfides associated with primary igneous silicates
Fe–Ni–Cu sulfides intimately associated with primary igneous silicates of the dolerite were exclusively identified in the small intrusive stock of Santa Ana (Figs. 6 and 7). Here, the Fe–Ni–Cu sulfides (up to 10 vol %) are disseminations between cumulus minerals (pyroxene, plagioclase and olivine) or post-cumulus hydrous silicates such as biotite (partially transformed to chlorite), ilmenite and apatite (Fig. 6). They consist of grains up to 2 cm in size made up of single, biphasic or polyphase aggregates of pyrrhotite [Fe1.00S1.00 to Fe0.98Cu0.015Ni0.05S1.00] ± pentlandite [(Fe4.52Ni4.27Co0.14)Σ=8.93S8.07 to (Fe4.75Ni4.07Co0.08 Cu0.01)Σ=8.91S8.09] ± chalcopyrite [Cu0.97Fe1.01S2.01 to Cu0.99Fe0.98S2.02] ± magnetite (Fig. 6; File S4, Supplement). These sulfides have globular-like morphologies, including droplet, lobate, cuspate and holly leaf (Fig. 6). Within the larger composite blebs, pentlandite has four different textures: granular (Pn-1), granular with marginal blades (Pn-2), fans (Pn-3) and flames (Pn-4) (Figs. 6 and 7).

Figure 6Backscattered electron images of selected sulfide grains associated with unaltered magmatic silicates from the Santa Ana olivine-rich dolerite stock. (a) Sulfide bleb fully hosted in primary clinopyroxene. (b–h) Sulfide blebs intercumulus to magmatic olivine and clinopyroxene. Abbreviations – Po: pyrrhotite; Pn: pentlandite; Ccp: chalcopyrite; Cpx: clinopyroxene; Plag: plagioclase; Ap: apatite; Chl: chlorite; Bt: biotite. Textural types of pentlandite correspond to granular (Pn-1), granular with marginal blades (Pn-2), fans (Pn-3) and flames (Pn-4).
As illustrated by the X-ray maps of Fig. 7, granular pentlandite (Pn-1) is commonly located around the margins of pyrrhotite and at the contact with chalcopyrite, where it may form loop or rim textures. In contrast, chalcopyrite is found as laths within oriented fractures in pyrrhotite or more frequently forming the outer portion of the composite aggregates.

Figure 7(a–b) X-ray images showing the textural and compositional feature of a large intercumulus Fe–Ni–Cu sulfide aggregate in the olivine-rich Santa Ana dolerite stock. Abbreviations – Po: pyrrhotite; Pn: pentlandite; Ccp: chalcopyrite; Amph: amphibole; Chl: chlorite. Textural types of pentlandite correspond to granular (Pn-1), granular with marginal blades (Pn-2), fans (Pn-3) and flames (Pn-4).
The nanoscale study targeted the globular-like sulfide assemblage of pyrrhotite–pentlandite–chalcopyrite shown in Fig. 6e. We extracted three thin foils that sampled two types of granular pentlandite (Pn-1 and Pn-2) as follows: (1) perpendicular to the contact between granular pentlandite with marginal blades (Pn-2) and pyrrhotite (thin foil 1; Fig. 8b), (2) within granular pentlandite (Pn-1) (thin foil 2; Fig. 8c), and (3) perpendicular to the contact of granular pentlandite (Pn-1) with chalcopyrite (thin foil 3; Fig. 8d).

Figure 8(a–d) Backscattered electron (BSE) images of the magmatic Ni–Fe–Cu sulfide aggregate from the Santa Ana olivine-rich dolerite stock shown in Fig. 6e. Bright-field (BF) HAADF images and corresponding EDS–STEM chemical maps of the FIB thin foils extracted from this sulfide aggregate are shown in (b1), (c1) and (d1). Abbreviations – Po: pyrrhotite; Pn: pentlandite; Ccp: chalcopyrite; Ap: apatite.
The STEM images and EDS–STEM maps collected from thin foil 1 are fully consistent at depth with the micrometer-sized structure observed on the grain surface. Thus, a sharp contact between Ni-free pyrrhotite and pentlandite is revealed by contrasting differences in S, Fe and overall Ni contents (Figs. 8b1 and 9a–b). At higher magnification, the HRTEM image shows that the contact is abrupt even in the nanoscale realm without a scalloped boundary and is marked by a perfectly incoherent interface where the lattice fringes of pyrrhotite and pentlandite display distinctively different orientations with a high-angle misfit (Fig. 9b). This incoherency of the crystallographic orientation relationship (COR) is also illustrated by the contrasting brightness in HRTEM images of the two minerals, evidencing different tilts between the crystallographic axes. The well-defined single-spot and annular patterns observed in the corresponding FFT image (Fig. 9b1) evidence the polycrystalline nature of both mineral matrices. Moreover, the identification of similar nanoscale features far away from their mutual contact suggests that the polycrystalline nature of both crystals is not related to lattice distortion in the proximities of the grain interface.

Figure 9(a–d) (HR)TEM images and corresponding FFT patterns of thin foil 1 shown in Fig. 8b1. Abbreviations – Po: pyrrhotite; Pn: pentlandite; Ccp: chalcopyrite; Bn: bornite.
Crystallographic data collected from the pyrrhotite–pentlandite interface yield measured d spacings typical of the monoclinic (space group C2/c) polytype 4C of pyrrhotite (hereafter pyrrhotite-4C), and the cubic Fm3m structure of pentlandite (Fig. 9; Table A1 and File S5 in the Supplement). Pyrrhotite crystals exhibit lattice fringes of the aforementioned cubic F3m3 pentlandite (File S5, Supplement), as well as of tetragonal I2d chalcopyrite and cubic F3m bornite (Fig. 9; Table A1 and File S5 in the Supplement). In contrast, pentlandite only hosts lattice fringes of tetragonal I2d chalcopyrite.
The nanoscale study of thin foils 2 and 3 shown in Fig. 8c–d was limited to STEM analysis because we noted visible evidence of changes during the FIB sample preparation, attributable to mechanical and physical–chemical causes. These artifacts were apparently introduced by mechanical deformation and curling of lamellar material during cutting–milling–lifting–attaching–thinning, very likely causing activation of pre-existing fractures not visible on the mineral surface by means of FE-SEM. The STEM images and EDS–STEM maps collected from thin foil 2 allow identification of a chalcopyrite particle within granular pentlandite (Pn-1) hosting a crew of decrepitated melt–fluid inclusions. Unlike on the grain surface, the deep contact between chalcopyrite and pentlandite consists of a fracture, which very likely originated during FIB preparation. Similar obliteration of the original relationships between Pn-1 and chalcopyrite is also observed in thin foil 3. Here, the contact of a relatively homogenous pentlandite grain (Pn-1) with chalcopyrite was distorted and fractured, producing areas with distinctively different thicknesses. Thicker zones in the chalcopyrite grain produced higher intensity in the map of Cu abundance, which is not due to chemical variations.
5.2 Micrometer-scale to nanoscale characterization of sulfides associated with partially altered silicates
Pyrite and chalcopyrite are associated with partially altered and secondary (metamorphic) silicates of both olivine-bearing (Olvera) and olivine-free (Ermita Nueva, Arroyo del Saltillo, Peña Arpada and Alcalá de los Gazules) dolerites (Fig. 10a–h). They form single and composite grains (from a few micrometers to several millimeters in size) that are either included in or interstitial between partially altered primary silicates (olivine, pyroxenes and plagioclase). Pyrite [Fe0.91Co0.03Ni0.02S2.03As0.01 to Fe1.00S1.00] displays an anhedral shape with spongy internal texture and weak anisotropy in reflected light (Fig. 10a–g; File S4, Supplement). In places, pyrite is intergrown with quartz, filling late fractures (Fig. 10h). Chalcopyrite [Cu0.86Fe1.00Co0.02S2.12 to Cu0.95Fe1.02S2.02] forms single grains randomly dispersed in the altered silicate matrix or more commonly replacive rims around the porous pyrite (Fig. 10c–g; File S4, Supplement).

Figure 10Photomicrographs under reflected-light microscope (parallel nicols) of representative pyrite ± chalcopyrite assemblages in hydrothermally altered olivine-free hypabyssal dolerites. (a–b) Alcalá de los Gazules. (c–d) Olvera. (e–f) Arroyo del Saltillo. (g) Peña Arpada. (h) Ermita Nueva. Abbreviations – Py: pyrite; Ccp: chalcopyrite; Mt: magnetite; Cpx: clinopyroxene; Plag: plagioclase; “Plag”: saussurite plagioclase; Chl: chlorite; Qtz: quartz.
Careful inspection by FE-SEM shows abundant solid inclusions (< 5 µm) of chalcopyrite hosted in pores infilled by secondary quartz ± epidote ± goethite (Fig. 11a–b). In contrast, large chalcopyrite grains typically host sphalerite and galena along with apatite (Fig. 11c–f). Cobaltite [Co0.76Ni0.07Fe0.10)Σ=0.93S1.11As0.97 to (Co0.81Ni0.10Fe0.09)Σ=1.01S1.05As0.94] occasionally forms rims wrapping pyrite grains (Fig. 11g–h; File S4, Supplement).

Figure 11BSE images of representative pyrite ± chalcopyrite assemblages hosting nano- to micrometer-sized inclusions of chalcopyrite, sphalerite and galena as well as rims of cobaltite in hydrothermally altered olivine-free hypabyssal dolerites. (a–f) Peña Arpada. (g–h) Arroyo del Saltillo. Abbreviations – Po: pyrrhotite; Py: pyrite; Ccp: chalcopyrite; Sph: sphalerite; Gn: galena; Cob: cobaltite; Mt: magnetite; Cpx: clinopyroxene; “Plag”: saussurite plagioclase; Chl: chlorite; Gth: goethite; Ap: apatite; Ilm: ilmenite.
The nanoscale study was performed on two thin foils cut perpendicular to micrometer-sized chalcopyrite inclusions hosted in the pores of a single large pyrite grain, which were interstitially between plagioclase ghosts from the strongly altered Peña Arpada body (Fig. 12a–e).

Figure 12(a–c) BSE images of porous pyrite from the olivine-free hypabyssal dolerite of Peña Arpada shown in Fig. 11a. BF HAADF images and corresponding EDS–STEM chemical maps of the FIB thin foils extracted from this sulfide aggregate are shown in (d) (thin foil 1) and (e) (thin foil 2). Abbreviations – Ccp: chalcopyrite; Gth: goethite; Qtz: quartz; Va: vaesite.
The STEM and HRTEM images and EDS–STEM maps collected from thin foil 1 (Figs. 12 and 13) confirm that the chalcopyrite micro-inclusion is fully embedded in a matrix of iron oxide intimately intergrown with quartz. Crystallographic data collected from this chemically homogenous chalcopyrite micrometer-sized inclusion allow identification of the planes (112) and (224) of the tetragonal I2d form of chalcopyrite (Fig. 13d; Table B1 and File S6 in the Supplement). The HRTEM inspection of the iron oxide matrix shows that it developed at the expense of pyrite, through its interface with quartz (Fig. 13a–d). The FFT patterns collected from this iron oxide matrix identify crystalline goethite with the following characteristic planes: {111}, (130), (200), (210), (212) and (240) (Table B1 and File S6 in the Supplement). Likewise, HRTEM and FFT images of pyrite in the matrix also show a crystalline nature, typified by the coexistence of the characteristic planes (111), (112)/(221) and (311) of pyrite, with abundant lattice fringes of marcasite (e.g., (202)py/(121)mc, (222)py/(130)mc and (302)py/(131)mc; Fig. 13; Table B1 and File S6 in the Supplement).

Figure 13(HR)TEM images and corresponding FFT patterns of thin foil 1 shown in Fig. 12d. (a–d) Locations targeted for the nanostructural study. Abbreviations – Py: pyrite; Mc: marcasite; Po: pyrrhotite; Ccp: chalcopyrite; Gth: goethite; Qtz: quartz.
Moreover, the analysis of areas relatively enriched in Fe and depleted in S in the pyrite–marcasite matrix reveals nanodomains of pyrrhotite with both monoclinic C2/c polytype 4C and orthorhombic Cmca polytype 11C structures (Figs. 12d and 13c; Table B1; File S6, Supplement). On the other hand, HRTEM observation of quartz shows structural and chemical homogeneity of a monocrystal yielding measured d spacings typical of the alpha-quartz, or low quartz (Fig. 13a; Table B1; File S6, Supplement).
The STEM and HRTEM images and EDS–STEM maps collected from thin foil 2 show that the chalcopyrite inclusion is in direct contact with a pyrite matrix hosting marcasite fringe (Figs. 12 and 14; File S6, Supplement). Thus, the goethite halo is limited to the deepest portion. The EDS–STEM images also reveal chemical heterogeneity in terms of S, Cu, Co and Ni within the chalcopyrite inclusion, which is also observed by brightness contrast in the HAADF image (Fig. 12e). These variations are related to patchy Cu–Fe zoning, as well as to the presence of the minute inclusion of a Ni–Co sulfide not observed on the surface. The FFT patterns also evidence the tetragonal I2d form of chalcopyrite hosting an inclusion of vaesite (Fig. 14c–d and File S6 in the Supplement).
6.1 Magmatic segregation of Ni–Fe–Cu sulfide melts in olivine-bearing dolerites
Sulfides in the Santa Ana dolerite stock form disseminated globular aggregates within primary magmatic silicates or at their interstices (Fig. 6). This intimate intergrowth with silicates supports a genetic link to magmatic processes that formed their hosting minerals.
Morata and Puga (1992) suggested that the Santa Ana dolerite stock crystallized from a basaltic melt derived from an enriched mantle source that partially melted during continental rifting. The high Mg# of olivine and the high concentrations of trace elements in clinopyroxene, coupled with the prominent negative anomalies of Pb, Sr and (to a lesser extent) Eu in the latter (Fig. 5c), suggest that the parental melt substantially fractionated olivine and plagioclase prior to clinopyroxene. Clinopyroxene in the Santa Ana dolerite is Ti–Na-rich diopside (Fig. 5a; File S2, Supplement), thus supporting the transitional-alkaline affinity of its parental melt (Portugal-Ferreira et al., 1995; Morata et al., 1997). In addition to fractional crystallization, the high concentrations of trace elements and MREE HREE fractionation of this clinopyroxene (Fig. 5c) support the claim that transitional-alkaline parental magmas derived by low degrees of melting of an enriched lithospheric mantle started to melt in the garnet peridotite facies (> 70 km depth). Melting of the lithospheric mantle likely occurred during the early stages of continental rifting associated with asthenosphere upwelling (Pérez-López et al., 2021). The calculated compositions of melts in equilibrium with the Santa Ana diopside reinforce these conclusions, as they resemble those of basalts with alkaline affinity from magma-poor continental rifted margins (Fig. 5d). In such a tectonic setting, intraplate basalts are extracted from deep mantle sources by low rates of partial melting at relatively low fO2, thus being saturated or close to saturation in sulfide when they leave the mantle source (Kovalenko et al., 2007; Sun et al., 2020; Liu et al., 2021). Therefore, they should have enough sulfur content at sulfide saturation (SCSS) to separate sulfide melts by simple fractional crystallization (e.g., Seat et al., 2009). However, the local relation of the Fe–Ni–Cu sulfides to hydrous silicates (amphibole, phlogopite and biotite; Fig. 6) in Santa Ana supports that increase in aSiO2 and fS2 took place concomitantly with the accumulation of volatiles. Sulfur originally present in the silicate melt as H2S may have exsolved as metal-rich immiscible sulfide liquid, via the reactions between H2S, base metal oxide and (Cl, F, OH, CO) complexes (e.g., Ferrario and Garuti, 1990):
where BMO is base metal oxide, BMCl is base metal chloride and BMS is base metal sulfide.
Upper-crustal conduits (pipes, dikes and sills) for basic magmas, similar to those developed during continental break-up in Triassic sediments of the external Betic Cordillera (Fig. 15; Morata, 1993; Pérez-López et al., 2021), are favorable structures for the immiscible segregation of sulfide melts. In Santa Ana, the observation of xenoliths of gypsum-rich clays and carbonaceous metapelites (Morata and Puga, 1992) suggests that segregation of sulfide melts was likely aided by supply of S and SiO2 via assimilation of the country rocks (Ripley and Li, 2013). Sulfide droplets flushing out to higher levels of the magmatic plumbing system was possibly aided by volatile-rich bubbles that originated from oversaturation after the crystallization of the lower olivine-rich cumulate layer (Mungall et al., 2015; Blanks et al., 2020). However, the small volume of sulfides in the rock and their low average S Se ratio (∼ 2400; File S4, Supplement) overlapping the typical range of mantle sulfides (2000–4000; Durand et al., 2016) pinpoints very limited crustal contamination of the parental magma.

Figure 15Genetic model for magmatic Fe–Ni–Cu sulfides in igneous basic rocks of the external zone of the Betic Cordillera. (a) Continental rifting aids ascent of primitive magmas derived from the subcontinental lithospheric mantle (SCLM; modified from Morata, 1993). (b) Structurally controlled emplacement of intraplate basaltic magmas by rifting of continental crust allows development of active (sub)volcanic plug intruding through Keuper sediments (adapted from Pérez-López et al., 2021). The ideal orientation of the dike is vertical, but it is locally reoriented into parallelism by pre-existing structures such as fractures and stratification planes. (c) Conduit-style injection where stagnant (conformably oriented) chambers have developed, facilitating magma-entrained primary silicate mushes being left to settle through the conduit, thus forming cumulate layers, particularly at the conduit margins, like those observed in the plutonic olivine-bearing dolerite of Santa Ana. In this case, fractional crystallization and possibly crustal contamination of the upward-moving magma promoted segregation of larger volumes of sulfide melt droplets entrained in the plug, which settled through the conduit as an interstitial or intercumulus phase along with hydrous silicates around the cumulate silicates (olivine, plagioclase and clinopyroxene). Magmas channelized upwards through the conduit interconnected with the shallower fracture network may still contain some sulfides, giving rise to hypabyssal bodies with fewer magmatic sulfides in the shallower portion of the sedimentary pile.
6.2 Crystallization sequence of magmatic Ni–Fe–Cu sulfides
Geothermometry of pyroxenes yields crystallization temperatures of the Santa Ana dolerite stock at ∼ 1175–1150 °C (Morata, 1993). According to the condensed phase diagrams, slightly below these temperatures (∼ 1100 °C) the first solid crystallizing from a Fe–Ni–Cu sulfide melt is the monosulfide solid solution (i.e., MSS; Fe1±xS to Ni1±xS) (Fig. 16a). Experiments in the quaternary (Fe–Ni–Cu–S) and ternary systems (Fe–Cu–S and Fe–Ni–S) show that MSS may coexist with Cu–Fe–(Ni) sulfide melt at ∼ 900 °C (Fig. 16b). In the Fe–Ni–S portion of the system (Fig. 16c), as the temperature drops, the metal excess in MSS is exsolved in a variety of pentlandite forms, depending on the cooling rate. Thus, at temperatures between 550–400 °C when Ni diffusion in MSS is relatively fast, pentlandite is exsolved as granular pentlandite around the margins of pyrrhotite and at the contact with chalcopyrite, where it may form loop or rim textures (Helmy et al., 2021; Smith et al., 2023). At lower temperatures, cooling rates decrease and pentlandite first exsolves as ribbons at the margin of pyrrhotite (≤ 300 °C) and as flames, fans or blades within it at ∼ 100 °C (Kelly and Vaughan, 1983; Helmy et al., 2021). This crystallization evolution of sulfide melts explains our polyphase sulfide assemblages (Fig. 16) and the suite of pentlandite micro-textures well, including granular (Pn-1), granular with marginal blades (Pn-2), fans (Pn-3) and flames (Pn-4) (Figs. 6 and 7), as in experiments (e.g., Helmy et al., 2021). The lack of irregular contacts between pyrrhotite and pentlandite, at both micrometer- and nano-sized scales (Figs. 6–9 and File S5 in the Supplement), rules out the possible formation of pentlandite via peritectic reaction of MSS with coexisting Cu–Ni sulfide liquids observed in experiments (e.g., Sugaki and Kitakaze, 1998; Kitakaze et al., 2016) and nature (e.g., Mansur et al., 2019; González-Jiménez et al., 2020).

Figure 16Phase relations (1 bar) in the sulfur-rich portion of the Cu–Fe–Ni–S system at 1000 °C (a) and 850 °C (b) with specific detail of the portions Ni–Fe–S at 850 (c), 550 (d), 250 (e) and 135–100 °C (f) and Cu–Fe–S at 800 (h), 500 (i) 300 and 200 °C (j). The figures are modified from Kullerud and Yund (1962), Craig and Kullerud (1969), Craig (1973), and Naldrett et al. (2009). Note that in (a) the MSS (purple star) coexists with two liquids at 1000 °C (a Ni–Fe-rich liquid in the Ni–Fe–S portion and a Cu-rich liquid in the Cu–Fe–S portion). At 850 °C (b), the MSS coexists with chalcopyrite (purple star), as indicated by the dotted red line. The assemblage of pyrrhotite ± pentlandite ± chalcopyrite associated with unaltered primary silicates attains equilibrium at 550–500 °C, as indicated with dotted red lines inset in (d) and (h). In contrast, the assemblage pyrite ± chalcopyrite associated with altered (secondary) silicates is stable at 300 °C and further below (i–j). Abbreviations – iss: intermediate solid solution; bn-ss: bornite solid solution; dg-ss: digenite solid solution; dg: digenite (Cu9S5); cv: covellite (CuS); cc: chalcocite (Cu2S); icb: isocubanite (CuFe2S3); hc: haycockite (Cu4Fe5S8); nk: nukundamite (Cu5FeS6); nd: idaite (Cu5+xFeS6+x); mh: mooihoekite (Cu9Fe9S16); tal: talnakhite (Cu9Fe8S16); al: anilite (Cu7S4); dj: djurleite (Cu31S16); mss: monosulfide solid solution [(Fe,Ni)1±xS]; vs: vaesite (NiS2); po (m): monoclinic pyrrhotite (Fe1±xS); po (h): hexagonal pyrrhotite (Fe1±xS); tr: troilite (FeS); py: pyrite (FeS2); pn: pentlandite [(Ni,Fe)9S8]; viol: violarite (FeNi2S4); mill: millerite (NiS); god: godlevskite (Ni7S6); hz: heazlewoodite (Ni3S2).
In the model proposed above, high-temperature MSS solidifies with a hexagonal lattice structure, and it breaks down into granular pentlandite with the cubic Fm3m structure below 610 °C and monoclinic pyrrhotite at 315 °C. This is consistent with the cubic Fm3m structure of granular pentlandite and the monoclinic polytype 4C of pyrrhotite identified here (Figs. 8–9, Table A1 and File S5 in the Supplement; Wang and Salveson, 2005). An exsolution-driven mechanism of Ni from pyrrhotite is further suggested by the presence of lattice fringes off cubic Fm3m pentlandite within pyrrhotite (Fig. 9; Table A1 and File S5 in the Supplement). These nanostructures are likely “relicts” of some Ni that was incompletely extracted during the diffusion processes, thus explaining the slight deviations from the ideal stoichiometry in EPMA and EDS–STEM maps of these sulfides. It is worth noting that Helmy et al. (2021) documented synthetic pyrrhotites still containing relatively high amounts of Ni (up to 7.2 wt % in the form of pentlandite nanoinclusions as observed here) in experiments equilibrated at constant temperature (15 °C d−1) after 2 weeks, arguing that longer cooling times (months to years) should be necessary to account a full depletion of MSS in Ni. Therefore, the incomplete extraction of Ni in the Ni-poorer pyrrhotites analyzed in this study (< 0.43 wt %; File S4, Supplement) could reflect longer crystallization rates than in the experiments, consistent with the slow cooling rates necessary to produce ophitic and subophitic textures like those observed here (∼ 7–10 years; Holness et al., 2015). Moreover, lattice fringes of tetragonal I2d chalcopyrite in granular pentlandite (Pn-1) (Table A1 and File S5 in the Supplement) suggest an additional role of the Cu-rich sulfides in the formation of pentlandite. In fact, recent nanoscale observations of experimental runs by Helmy et al. (2021) have shown that a continuous “contact zone” of pentlandite may develop between MSS and ISS at 550–450 °C. Further Ni extraction from ISS within the range of 200–250 °C makes this “contact pentlandite” zone crystallize as granular pentlandite, when cooling is slowly maintained in time. This interpretation is consistent with the fact that granular pentlandite (Pn-1) is locally sandwiched between pyrrhotite and chalcopyrite and also with the slow cooling rate expected for stabilization of the disordered monoclinic structure 4C of pyrrhotite, instead of the well-ordered monoclinic 3C (Wang and Salveson, 2005).
Additionally, the identification of minute laths of chalcopyrite in fractures inside pyrrhotite (Fig. 7) suggests that significant amounts of Cu were still present in the precursor MSS after separation of the coexisting Cu–Fe–(Ni) melt. Experimental works have shown that up to 7.5 wt % Cu may be accommodated as Cu2+ in the hexagonal Ni–S type structure of MSS at 935 °C (Cabri, 1973; Rajamani and Prewitt, 1973; Ballhaus et al., 2001) or as exsolved nanoparticles of chalcopyrite at 950 °C (Helmy et al., 2021). We have not found discrete nanoparticles of Cu in pyrrhotite but nano-sized domains of tetragonal I2d chalcopyrite and cubic F3m bornite, which support an incomplete release of Cu initially bounded in the precursor MSS lattice. Thus, very low amounts of Cu and Ni (< 1 wt %) detected by EPMA suggest an almost complete sub-solidus re-equilibration of MSS into its low-temperature product pyrrhotite, very likely continuing down to low temperatures (≤ 100 °C; e.g., Kelly and Vaughan, 1983) and trapping the remaining Cu and Ni into chalcopyrite, bornite and pentlandite nanodomains (González-Jiménez et al., 2024).
On the other hand, larger chalcopyrite grains associated with both pyrrhotite and pentlandite (Figs. 6g–h and 7a–b) suggest that each volume of sulfide melt followed its own fractional crystallization path after the mechanical separation explained above. In the Fe–Cu–S portion of the system, a Ni- and Cu-rich residual sulfide melt might eventually originate after the crystallization of MSS (Fig. 16d). According to the experiments of Craig and Kullerud (1969), a Ni-poor and Cu-rich residual sulfide melt can coexist with Ni-rich MSS at ∼ 900 °C, whereas at 850 °C it crystallizes into the high-temperature cubic form of chalcopyrite (i.e., ISS; Fig. 16d). Tsujimura and Kitakaze (2004) have demonstrated experimentally that at 800 °C, a Cu–Fe–S melt may exist in the S-rich portion of the Cu–Fe–S system. Upon cooling at ∼ 700 °C, this sulfide melt crystallizes with a composition close to the ISS (Yund and Kullerud, 1966), which further re-equilibrates at much lower temperatures (≤ 100 °C) into chalcopyrite + pyrrhotite assemblages like those shown in Fig. 6h (Fig. 16d).
6.3 Possible segregation of Ni-poor, Cu–Fe–S-rich sulfide melt in the olivine-free hypabyssal dolerites
Some pyrite ± chalcopyrite grains identified in the olivine-free hypabyssal dolerites are fully hosted within (e.g., Fig. 10b) or are intergranular between (e.g., Fig. 10e–f) partially altered magmatic clinopyroxene and/or plagioclase. The bleb-like morphology of these sulfides raises the question of whether they are solid products of sulfide melts which were segregated contemporaneously with or shortly after the igneous silicates prior to hydrothermal alteration.
Clinopyroxene in dolerites from Alcalá de los Gazules and Arroyo del Saltillo is Ti, Na- and Al-poor augite (Fig. 5a–b, Supplement) with lower trace element abundances, no Eu fractionation and less negative Pb anomalies than diopside in the Santa Ana stock (Fig. 5c). These features support the claim that clinopyroxene crystallized from subalkaline tholeiitic magmas (Portugal-Ferreira et al., 1995; Morata et al., 1997) after precipitation of plagioclase from melts less differentiated than in the Santa Ana stock. Moreover, lower trace element contents and MREE HREE fractionations in clinopyroxene (Fig. 5c) support the notion that subalkaline tholeiitic melts were derived by higher degrees of melting of a shallower lithospheric mantle source compared to the transitional-alkaline melts of Santa Ana, likely during more mature stages of continental rifting (Pérez-López et al., 2021). The calculated compositions of melts in equilibrium with clinopyroxene of dolerites from Alcalá de los Gazules and Arroyo del Saltillo, using a set of partition coefficients consistent with its augitic composition and the tholeiitic affinity of parental melts, are similar to those of the Santa Ana stock (Fig. 5d). This calculation reproduces the large overlap in terms of REE between transitional-alkaline and tholeiitic magmatism in the external zone of the Betic Cordillera well (Morata et al., 1997; Groups 2 and 3 of Pérez-López et al., 2021). This would suggest that parental magmas of these dolerites (and by extension those of the geochemically similar dolerites from Ermita Nueva and Peña Arpada) could a priori saturate sulfides by processes similar to the parental melts of the Santa Ana cumulitic stock. However, experimental work shows that pyrite does not form on the solidus of conventional basaltic melt (Kullerud and Yoder, 1959) but via (1) exsolution from S-rich MSS on cooling (e.g., Naldrett et al., 1967; Piña et al., 2013) or (2) Fe loss in Fe-rich MSS during post-cumulus re-equilibration (e.g., González-Jiménez et al., 2018) with an important role of late magmatic hydrothermal fluids (Djon and Barnes, 2012; Piña et al., 2013). This is consistent with nanodomains of pyrrhotite with the disordered monoclinic structure 4C (Fe0.875S or Fe7S8) found within pyrite (e.g., Fig. 13c). These nanodomains may be the low-temperature product of re-equilibration of high-temperature magmatic MSS with the close-packed hexagonal (NiAs) structure or its low-temperature derivate pyrrhotite 11H (Fe10S11) (Wang and Salveson, 2005). In fact, pyrite analyzed here hosts appreciable quantities of metals that are compatible in MSS (i.e., Ni, Co and Cu).
The exsolution of pyrite from MSS rich in S takes place at temperatures below 700 °C (Naldrett and Kullerud, 1967; Naldrett et al., 1967). This exsolution requires the immiscible segregation of a Ni-poor, Cu–Fe–S-rich sulfide melt, which is very unlikely to occur from magmas subsaturated in olivine (Korneeva et al., 2020). In the model proposed above, such types of sulfide melts could be originated if Fe- and Ni-rich sulfides first segregated in a deep magmatic chamber, leaving behind Ni-poor, Cu-rich sulfide melts that eventually crystallized along with pyroxene and plagioclase in the shallower hypabyssal domains (McDonald and Holwell, 2007; McDonald et al., 2009; Ihlenfeld and Keays, 2011). However, this deep “plutonic” portion of a connected plumbing system is absent near the olivine-free hypabyssal dolerites from the external Betics.
The second possibility for the formation of magmatic-related pyrite is that precursor Fe-rich MSS underwent significant chemical readjustment through a different fractional pathway. In this scenario, original Fe-rich MSS could be depleted in iron before or once it was sealed in primary silicates as result of the preferential partitioning of Fe2+ into coexisting pyroxene or Fe-oxides (e.g., ilmenite). Therefore, the composition of the MSS would be shifted towards Fe-poorer and S-richer composition (Naldrett et al., 1989, 2009), giving rise, in an extreme case, to a nearly stoichiometric FeS2. A similar mechanism would have produced Fe loss in the ISS, shifting its composition towards the Cu–S joint of the Cu–Fe–S system. Phase relations within the ternary Cu–Fe–S system predict that pyrite can coexist in equilibrium with ISS at ∼ 700 °C, and further re-equilibration of ISS at lower temperature may produce pyrite + chalcopyrite assemblages similar to those in dolerites from the external Betics (Fig. 16d).
6.4 Metamorphic-related hydrothermal pyrite in the olivine-free hypabyssal dolerites
Most pyrite (± chalcopyrite) grains in the olivine-free hypabyssal dolerites are intimately intergrown with metamorphic silicates (chlorite, epidote, saussurite, prehnite, sericite and quartz; Figs. 12–13). Such a textural relationship links those sulfides with the hydrothermal alteration processes experienced by dolerites during metamorphism. In these rocks, chlorite and amphibole are the dominant alteration phases, bracketing hydrothermal alteration within the sub-greenschist to greenschist facies metamorphism at ∼ 221–278 °C (File S2, Supplement). This range of temperature is consistent with the presence in pyrite of nanodomains of marcasite, which may form along with pyrite as a thermodynamically metastable phase via hydrothermal Fe loss or S addition in pyrrhotite at < 300 °C under varying conditions of pH, Eh, fO2 and fS2 (Wang et al., 2006; Qian et al., 2011; Yao et al., 2020, 2021). This is consistent with the presence of relict pyrrhotite-4C in pyrite too, which is only stable above 326 °C (Wang et al., 2006; Yao et al., 2020, 2021, and references therein). This nanoscale observation is twofold: (1) it suggests an almost complete transformation of the parental pyrrhotite by interaction with hydrothermal fluid and (2) it indicates that once pyrite and/or marcasite formed through nanoscale conversion of precursor pyrrhotite, they could grow to macroscopic crystals from supersaturated solutions. Qian et al. (2011) showed that transformation of pyrrhotite to pyrite and/or marcasite at the nanometer scale is strongly controlled by pH and the saturation index rather than by Eh, fO2 and fS2 of the fluid. Thus, the latter authors documented pyrite formation by direct replacement of pyrrhotite and, simultaneously, by overgrowth from solution if pH > 5 and saturation indices are > 1000. In contrast, formation of marcasite is favored at pH < 4 if the solution is (S−2)-deficient with a saturation index ≪ 1000. The predominance of pyrite over marcasite in our samples does not necessary indicate high pH but may instead reflect the aforementioned (S−2)-rich nature of the hydrothermal fluid, which may have favored pyrite formation after pyrrhotite via S addition instead of Fe loss.
However, the latter mechanism does not rule out marcasite as a possible intermediate product, at least at the earliest stages of alteration (e.g., Xia et al., 2009a; Qian et al., 2011). Marcasite may have formed via a Fe-loss pathway according to the following reaction (Benning et al., 2000; Butler et al., 2004; Qian et al., 2011):
As the reaction progressed, pyrite may have formed via S addition during reaction of pyrrhotite with H2S (Eq. 2a) (Rickard and Luther, 2007) as follows:
The Fe-loss and S-addition pathways usually take place under anaerobic conditions and produce H2(g) (i.e., H+ is the oxidant). However, some authors (e.g., Murowchick, 1992; Qian et al., 2011) have suggested an alternative “O2 pathway” (i.e., oxidic and acidic) to emphasize the need for an external oxidant, proposing the following reactions:
Experimental syntheses (Qian et al., 2011; Yao et al., 2020, 2021) show that both anaerobic and oxic mechanisms are viable, although the oxic route is the most thermodynamically and kinetically favorable. The key observation extracted from the aforementioned experiments is that reactions producing mainly marcasite are usually conservative with respect to S (pathways of Fe loss in Eqs. 2a and 2b and O2 in Eq. 4), whereas those producing mainly pyrite tend to conserve Fe (O2 and H2S pathways; Eqs. 3 and 5). All these reactions produce a strong volume decrease and micrometer-sized porosity in the resulting iron disulfide, a feature observed in the pyrite analyzed here (Fig. 10).
Phase relations between pyrrhotite and pyrite in hydrothermal experiments show that formation of pyrite after pyrrhotite requires increasingly higher fugacity of H2S and O2 in the fluid (Kusebauch et al., 2018). Under the conditions of greenschist facies metamorphism, the hydration of igneous silicates to form secondary chlorite, epidote and amphibole decreases H2O and increases fS2 and fO2 in the system (e.g., Kanitpanyacharoen and Boudreau, 2012). This effect could drive the stabilization of pyrite over pyrrhotite and marcasite in the fS2–fO2–T thermochemical space. The observation that alteration haloes of some silicates occur about sulfide (Figs. 10 and 11) suggests that the presence of sulfide enhanced the formation of the greenschist silicate assemblage by the following reaction:
The H+ ions produced in this reaction, Eq. (6), may have been incorporated into hydrous alteration minerals, thus producing more pyrite with increasing alteration in surrounding silicates.
Additionally, the identification of goethite at the contacts between pyrite and secondary quartz confirms the oxic route in our case study. It further denotes that sufficient O2 was left after Eqs. (4), (5) and (6) to eventually react with Fe released by the dissolution of pyrrhotite (Eq. 4) to form this oxide. The electrochemically coupled reaction of goethite formation took place preferentially on the pyrrhotite surface and can be expressed as follows (Waal, 1984):
or
The path shown in Eqs. (7a) and (7b) implies loss of S during open-system reactions and drives pyrrhotite transformation to goethite, avoiding intersection with the pyrite stability field, likely postdating pyrite formation.
On the other hand, pyrite + quartz infilling veins crosscutting the metamorphic minerals at Ermita Nueva (Fig. 10h) suggest direct precipitation from late-stage metamorphic hydrothermal fluids (Pokrovski et al., 2021). In this body, the metamorphic assemblage is dominated by chlorite ± epidote ± albite ± calcite ± quartz, suggesting a metamorphic reaction at ∼ 237–251 °C (File S2, Supplement). Preferential alteration of both clinopyroxene and plagioclase likely led to high silica activity in solution, thus promoting deposition of pyrite along with the late-stage quartz (Alt et al., 2007; Ray et al., 2009). Experimental works suggest that homogenous nucleation of pyrite is insignificant in acidic and slightly acidic solutions under < 300 °C (because it requires an extremely high saturation index of 5.7×1014; Rickard and Luther, 1997). Nonetheless, more recent works demonstrate that high saturation may be overcome by non-conventional crystal growth via stabilization and coalescence of nanoparticulate pyrite in the hydrothermal fluid (Yücel et al., 2011; Gartman et al., 2014; Findlay et al., 2019). This mechanism experimentally tested at both micrometer (Rickard and Luther, 2007) and nanometer scales (Yao et al., 2021) can be expressed as follows:
The constituents Fe2+ and H2S or HS− are usually dissolved in the aqueous silica-rich fluid produced during the latest stages of hydrothermal alteration of gabbroic rocks in seafloor basins (e.g., Alt and Shanks, 1998).
6.5 Replacive rims of Fe–Cu sulfides and Co–Ni sulfarsenides in pyrite
Pyrite from olivine-free hypabyssal rocks exhibits rims of chalcopyrite or cobaltite, as well as pores infilled by nanometer- to micrometer-sized inclusions of chalcopyrite-preserving domains of pyrite, pyrrhotite and vaesite (Fig. 10c–g and File S6 in the Supplement). Rickard and Cowper (1994) experimentally tested the direct replacement of pyrite to chalcopyrite by reaction of pyrite with aqueous Cu at < 200 °C and pH = 3.0–4.5. In these experiments, chalcopyrite was an intermediate product that is ultimately transformed to bornite and digenite in the presence of excess aqueous Cu+2. However, Cu+1 is a more common species in the redox state, prevailing in fluids involved in the hydrothermal alteration of gabbroic rocks. According to Rickard and Cowper (1994), pyrite may react with aqueous Cu+1 at 100 °C, giving rise to chalcopyrite through the following reaction:
However, more recent studies have shown that in hydrothermal fluids, Cu+1 is preferentially transported as hydrosulfide (; Mountain and Seward, 2003) and chloride (CuCl, , ; Etschmann et al., 2010) complexes. To date, experimental investigation of pyrite replacement by chalcopyrite via interaction with hydrothermal fluids is only available for Cu-rich chloride complexes (Zhang et al., 2021). The results of these experiments carried out at 100–250 °C showed that chalcopyrite forms after pyrite if the fluid is acidic to neutral (pH = 3.0–6.0) at > 150 °C. They also showed that this is a redox-coupled dissolution–precipitation reaction, with the oxidative dissolution of pyrite to form sulfate, generating the electrons that maintain the reductive replacement of pyrite by chalcopyrite. In our case study, direct overgrowth of chalcopyrite around porous pyrite grains highlights the role that the network of micrometer-size pores played to enable the chemical exchanges between pyrite and the fluid (see the islands of pyrite within chalcopyrite following pre-existing pores in Fig. 10e–g). Zhang et al. (2021) have also observed such a replacement mechanism in their experiments, proposing a redox-coupled dissolution–precipitation reaction in chloride-rich hydrothermal fluids as follows:
It is worth noting that we have also identified relicts of pyrrhotite within chalcopyrite at both micrometer (Fig. 11f) and nanometer (Fig. 14c) scales, thus providing additional evidence for the replacive origin of chalcopyrite. The experimental work by Cooper and Rickard (1989) supports the notion that chalcopyrite may form via reaction of pyrrhotite with Cu+2 in sulfate solutions at < 100 °C. Therefore, the coexistence within chalcopyrite of both pyrrhotite and pyrite nanodomains suggests two alternative pathways for its formation of this Cu-rich sulfide in our samples: (1) pyrrhotite → pyrite/marcasite → chalcopyrite and (2) pyrrhotite → chalcopyrite. In this model, nano- to micrometer-sized inclusions of chalcopyrite in pores of pyrite after pyrrhotite and of vaesite (NiS2), sphalerite (ZnS) and galena (PbS) within replacive rims of chalcopyrite could correspond to metals initially contained in pyrite (or pyrrhotite) precursor, which were re-precipitated in situ at the mineral interface of the pores. As noted above, many pyrite grains analyzed here contain Cu, Ni, Zn and Pb in amounts detectable by EPMA, which may have been liberated from the pyrite structure during replacement reactions (e.g., Deditius et al., 2011; Yao et al., 2020) and stabilized during low-temperature alteration at < 200 °C.
The microstructural position of cobaltite at the margins of pyrite in Saltillo dolerites (Fig. 11g–h) suggests its latter formation relative to the sulfide. A formation temperature of ∼ 300 °C is suggested for this cobaltite based on its low nickel and Fe contents (Fig. 17), consistent with temperatures of metamorphism recorded in the host rock.
Plutonic and hypabyssal basic rocks intruding the Triassic sediments of the external zone of the Betic Cordillera in southern Spain host assemblages of magmatic and hydrothermal Fe–Ni–Cu (pyrrhotite, pentlandite, chalcopyrite, pyrite, marcasite and vaesite), and Fe–Zn–Pb sulfides (sphalerite and galena). Magmatic Fe–Ni–Cu sulfides crystallized from sulfide melts segregated by immiscibility from intraplate basaltic melts injected through magma conduits in the breaking up of continental crust during the initial stages of continental rifting. Nanoscale observations allow disclosing the solidification of Fe–Ni–S melt into MSS and a remaining Cu–Fe–S melt into ISS, which later re-equilibrated at low temperature into pyrrhotite ± pentlandite ± chalcopyrite assemblages. In contrast, pyrite ± chalcopyrite grains associated with metamorphic silicates (chlorite, epidote, saussurite, prehnite, sericite and quartz) are linked to metamorphic-related hydrothermal alteration of the dolerite. The nanoscale study suggests that hydrothermal pyrite (± marcasite) formed via replacement of pre-existing Fe-rich MSS at < 300 °C. In contrast, hydrothermal chalcopyrite could form according to the two following alternative pathways: (1) pyrrhotite → pyrite/marcasite → chalcopyrite or (2) pyrrhotite → chalcopyrite. Additionally, remobilization of Zn, Pb, Ni and Co during hydrothermal alteration is supported by minute inclusions of sphalerite, galena and vaesite in secondary pyrite (and chalcopyrite) as well as rims of cobaltite around them.
Table A1Summary of characteristic indexed FFT d-spacing values for the unaltered sulfide from Santa Ana shown in Figs. 8 and 9. Data source for reference d spacings: monoclinic C2/c polytype 4C pyrrhotite (Powell et al., 2004); cubic Fm3m pentlandite (Tsukimura et al., 1992; Tenailleau et al., 2006); tetragonal I4d chalcopyrite (Knight et al., 2011); cubic F3m bornite (Ding et al., 2005a, b).

Table B1Summary of characteristic indexed FFT d-spacing values for the unaltered sulfide from Peña Arpada shown in Figs. 12, 13 and 14. Data source for reference d spacings: cubic Pa3 pyrite (Schmidt-Beurmann and Lottermoser, 1993; Rieder et al., 2007); orthorhombic Pnnm marcasite (Rieder et al., 2007); monoclinic C2/c polytype 4C pyrrhotite (Powell et al., 2004); orthorhombic Cmca polytype 11C pyrrhotite (Morimoto et al., 1970; De Villiers et al., 2009); tetragonal I4d chalcopyrite (Knight et al., 2011); cubic Pa3 vaesite (Nowack et al., 1989; orthorhombic Pnma/Pbnm goethite (Gualtieri and Venturelli, 1999; Nagai et al., 2003); trigonal P3221 quartz (Kihara, 1990).

All data derived from this research are original data obtained by the authors for the present study and are presented in the enclosed tables, figures and Supplement.
The supplement related to this article is available online at https://doi.org/10.5194/ejm-37-191-2025-supplement.
All authors contributed to the study conception and design. Fieldwork in the Betic Cordillera (Spain) was carried out by JMGJ, IFBQ, CM, FAJC, LY and FG. Material preparation, data collection and analysis were performed by JMGJ, IGP, ARFG and LY. The first draft of the manuscript was written by JMGJ and ES, and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
The contact author has declared that none of the authors has any competing interests.
Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors.
We wish to acknowledge the assistance of Jesús Montes (Department of Mineralogy and Petrology, Universidad de Granada) in the preparation of the polished sections and the assistance of Cristobal Cantero (Sevicios Centrales de Investigación of the Universidad de Huelva) and Isabel Sánchez Almazo (Centro de Instrumentación Científica of the Universidad de Granada) and Manuel Jesús Román Alpiste (IACT-CSIC) for their assistance with EPMA, FE-SEM and LA-ICP-MS respectively. Authors also acknowledge the use of instrumentation as well as the technical advice provided by the national facility ELECMI ICTS node “Laboratorio de Microscopías Avanzadas” at the Universidad de Zaragoza. We would like to thank Laura Casado Zueras, Alfonso Ibarra, and Rodrigo Fernández-Pacheco Chicón from LMA (Laboratorio de Microscopías Avanzadas) of the Universidad de Zaragoza, as well as José María Geraldía Sánchez and Lorena González Souto, for their invaluable help with the FIB and HRTEM sample preparation and analyses. José Juan Calvino Gámez from the Universidad de Cádiz is also acknowledged for his input to TEM data interpretation. The authors are also grateful to José María González Benítez and Josefa Jiménez García for their help and attention during fieldwork in the area.
This research has been supported by the project PROYEXCEL_00705 “Metallogeny of Cobalt in the Betic Cordillera” (grant no. P21-00705), funded by the Consejería de Transformación Económica, Industria, Conocimiento y Universidades de la Junta de Andalucía.
The article processing charges for this open-access publication were covered by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI).
This paper was edited by Riccardo Tribuzio and reviewed by Maria Rosaria Renna, Hassan Helmy, and one anonymous referee.
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